g : If the "Groups" module of your pipeline is turned on, you can use the grouping variables specified there to set which group this copy of CellProfiler should process - i.e., if your pipeline is set up to group by Well, you might use -g Well=A01 If you want to break your CellProfiler job up (to run in stages, or across many machines, or many terminal windows on the same machine), you may want to add a grouping component to your command. ![]() file-list : A list of files, one per line, that should be loaded by the Images module and then analyzed by CellProfiler. data-file : A CSV designed to work with the LoadData module (See module help for more details). Unless using a batch file, CellProfiler will additionally scan all the files in this folder and try to make them into image sets for your pipeline - great if you don't want to otherwise specify input sets with one of the methods below, but be warned it can be very slow if you point it at a huge directory! i : Specifies the Default Input Directory (if any modules in your pipeline are using files you've told it will be in the Default Input Directory). Your input component can be one of a few different things - or might be omitted entirely, if you're using a batch file. p : Your pipeline file (or batch file created with the CreateBatchFiles module) you want to execute See Adapting CellProfiler to a LIMS environment for more information. c -r : Flags you need to use to run CellProfiler headless. You can drag and drop the executable into your terminal window, which is typically easier than typing it out. If NOT, this needs to be the path to your existing CellProfiler executable, which for a PC will look something like C:\Users\UserName\ProgramFiles\CellProfiler\CellProfiler.exe , and for a Mac will look something like /Applications/CellProfiler/Contents/MacOS/cp . ComponentsĬellprofiler -c -r -p /path/to/pipeline/file.cppipe -o /path/where/the/output/goesĬellprofiler : If you've installed CellProfiler from source, rather than downloading it prebuilt from our website, just typing cellprofiler is how you'll call it from the terminal. If you're willing to script some ways to scatter the CellProfiler jobs, though, or don't mind running one job at a time, headless processing can be incredibly helpful!Ī general CellProfiler headless command will have a few common pieces, and a few that will change depending on your exact setup. It also has a major potential disadvantage in that while CellProfiler running graphically on your desktop will automatically use as many cores on your computer as you permit, CellProfiler running headlessly from the command line will only run one job at a time. Running CellProfiler from the command line has a major advantage - you don't need to spend computational power or memory creating the graphical user interface (GUI) that you're used to using in CellProfiler! ![]() Cross posted from our GitHub wiki - check there for any future updates! Big Data, new epistemologies and paradigm shifts. That said, several jupyter notebooks are provided to allow those who are interested to develop relevant coding skills through interactive exercises on your own time. ![]() The workshop is suitable for absolute beginners and NO CODING SKILLS are required. The workshop intersperses instruction with discussion and invites participants the chance to develop a research project idea through several steps. It offers attendees a chance to understand and discuss what computational social science is, what it is good for, how to become a computational social scientist and what are the basic steps to follow in and ideal computational social science research project. This free workshop, organised by the UK Data Service, is an introduction to computational social science. While to some degree social science research has always been marked by technological approaches, the field of computational social science involves the use of tools, data and methods that require a different skill set and mindset. ![]() The social sciences are no different, with many new forms of social data only available or practical through computational means (Kitchen, 2014). Scientific research and teaching is increasingly influenced by computational tools, methods and paradigms.
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![]() I’m not sure if this is possible yet as the 1st backup task hasn’t finished… create a new backup task but use the same backupIDĪny advice would be greatly appreciated. ![]() Use the same bucket but create a new backupID. However what I’m not sure about is what to do when the first backup of the my photo’s have finished and I wanted to start on the next network drive’s data.Ĭreate a 2nd bucket for the next drive letter, and so on. I’ve chosen a backup ID and the 1st network drive is uploading right now. Using the trial web gui I’ve initialised some storage on B2, when I go to create the backup it only lets me choose one drive letter which is fine, and thinking about it it would probably be better to split the network drives into different backup tasks. It was designed especially for Hyper-V private clouds EMC / Iomega px4-300d NAS - no drives - Used backblaze looked cheaper to me so far on what. So in my use case, I have my precious photo’s on my Z drive, my parents photo’s are on the Y drive, then a bunch of other data that’s replaceable on other network drives. I tried running in a docker container on my synology but I wasn’t comfortable with it and have gone back to a nice and easy windows installation. Backblaze is a pioneer in robust, scalable low cost cloud backup and. ![]() These are mapped as different drive letters to my Windows PC which I’ve got Duplicacy running on. We tested six new NAS devices and found that the Synology DS220+ is the best for. My synology has several shared folders, and I’m wanting to backup only 2 or 3 of the shared folders. I’m so close to paying for a web gui license but have a query. I’ve never done cloud backups before, only local, therefore this is all completely new to me and I’m certainly not comfortable with the CLI. Once the Installer is finished the backblaze client should open automatically. I’ve been going between the 2, one day I’ll decide hyperbackup, the next duplicacy, but something just keeps drawing me back to duplicacy. You can know more about BackBlaze after reading the next part. An example would be the Synology DiskStation (Synology, New Taipei City. For a couple of years I have been using the Synology DS220+, a two-bay, consumer-level network attached storage (NAS) to keep sprawling data under control. Backblaze is easy to use but can not provide you with too many backup options. MN, USA), Backblaze (San Mateo, CA, USA), and Carbonite (Boston, MA, USA). It will backup your apps, configurations, and data. Hi, I’ve been trying to decide between Duplicacy and Synology Hyperbackup to back up some of my data stored on my Synology to the Backblaze B2 service. BackBlaze is a simple backup solution without too many bells and whistles, but it’s definitely worth your time if you want to have a quick Synology backup without trouble. 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